Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs17834950 chr22:47239019 A/G 4.91E-5 406 3.43 17.48 13.7 KM Plot
STAD rs1794010 chr1:197038613 A/C 5.24E-7 406 5.8 17.77 14.07 KM Plot
STAD rs183801039 chr1:227320674 G/A 0 404 14.32 14.15 1.48 KM Plot
STAD rs1862081 chr4:106684545 G/A 5.14E-5 404 5.83 13.23 14.55 KM Plot
STAD rs187627742 chr1:182693381 A/C 1.12E-5 391 13.92 17.77 4.75 KM Plot
STAD rs188019168 chr1:227270981 A/T 0 406 14.27 14.23 1.48 KM Plot
STAD rs1888831 chr1:227262314 T/C 0 406 14.27 14.23 1.48 KM Plot
STAD rs199703716 chr7:148981129 A/AAGTTCAGACTGCCTC 4.52E-5 405 14.22 16.38 3.43 KM Plot
STAD rs199801297 chr12:124783958 C/A 2.26E-5 393 14.97 13.92 9.18 KM Plot
STAD rs200776467 chr12:124783960 A/G 2.26E-5 393 14.97 13.92 9.18 KM Plot
STAD rs200903966 chr1:182690102 G/GTA 6.06E-6 400 14.07 17.3 4.75 KM Plot
STAD rs200976027 chr1:227393018 CACAG/C 0 404 14.27 14.45 1.48 KM Plot
STAD rs201514620 chr12:124783961 T/C 2.26E-5 393 14.97 13.92 9.18 KM Plot
STAD rs201597271 chr1:182690040 A/G 5.98E-6 396 13.92 17.3 4.75 KM Plot
STAD rs201793711 chr8:95488400 A/C 5.0E-5 405 14.13 20.52 9.13 KM Plot